Stanford Root

Schedule

Stanford Root

Schedule

BIOS 216

The Practice of Reproducible Research

UNITS:2
GRADING:Medical Satisfactory/No Credit
LEVEL:Graduate
GER:—

The course will focus on computational approaches to ensure that all data, code, and analyses can be captured in a reproducible workflow, to be confirmed and replicated by you in the future, by other members of your team, and by reviewers and other researchers. We will cover how to satisfy FAIR principles, version control, how to create a git repository, utilize Github and how to create a reproducible dataset. Prerequisites: Basic knowledge of R. Recommended (not required): EPI 202 or BIOS 261/BIOS 262, STATS BIOS 60, or MS&E BIOS 125.

Syllabus for selected term:
View Winter 2027 Syllabus

Sections

1 Term
Lecture 1Open
ID: 26360
0 / 999 enrolled
DAYS:TBD
TIME:TBD
LOCATION:TBD
2units
Lab Section 1Open
ID: 26359
0 / 999 enrolled
DAYS:TBD
TIME:TBD
LOCATION:TBD
2units

BIOS 216: The Practice of Reproducible Research

2 units · Medical Satisfactory/No Credit

The course will focus on computational approaches to ensure that all data, code, and analyses can be captured in a reproducible workflow, to be confirmed and replicated by you in the future, by other members of your team, and by reviewers and other researchers. We will cover how to satisfy FAIR principles, version control, how to create a git repository, utilize Github and how to create a reproducible dataset. Prerequisites: Basic knowledge of R. Recommended (not required): EPI 202 or 261/262, STATS 60, or MS&E 125.

Offered in Winter 2027 at Stanford University.

Winter 2027 sections

  • Lecture — TBA TBA (Graduate)
  • Lab Section — TBA TBA (Graduate)

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  • BIOS 209: Experimental Design and Tools for Human Electrophysiology
  • BIOS 214: Open-Source MRI Sequence Development: Simulation to Scanner
  • BIOS 215: Stanford SKY Campus Happiness Retreat
  • BIOS 217: Foundations of statistics and reproducible research
  • BIOS 218: The Evolution of Evolvability
  • BIOS 219: Early Development Strategies for Neutralizing Antibodies and Brain Permeable Small Molecules
  • BIOS 223: Development and reporting of robust and reproducible LC-MS/MS assays
  • BIOS 224: Stem Cell Biology and Applications
  • BIOS 225: Diversity and Inclusion in STEMM

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